Transcript: lnc-BRCA1-3:6

Basic information

LNCipedia transcript ID: lnc-BRCA1-3:6 
LNCipedia gene ID: lnc-BRCA1-3
Ensembl Gene ID: ENSG00000267002
Ensembl Transcript ID: ENST00000590740
Location (hg38): chr17:43160290-43170403
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5084 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000590740.2
Alternative gene names: ENSG00000267002.2; RP11-242D8.1; AC060780.1; ENSG00000267002.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.5065 non-coding 
CPAT coding probability 18.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRCA1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BRCA1-3:6
4.1 lnc-BRCA1-3:6
5.0 lnc-BRCA1-3:6
5.1 lnc-BRCA1-3:6
5.2 lnc-BRCA1-3:6