Transcript: lnc-BRCA1-3:9

Basic information

LNCipedia transcript ID: lnc-BRCA1-3:9 
LNCipedia gene ID: lnc-BRCA1-3
Location (hg38): chr17:43148371-43164168
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2287 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT053822
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.6517 non-coding 
CPAT coding probability 10.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRCA1-3:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAT1-3:4
4.0 lnc-BRCA1-3:9
4.1 lnc-BRCA1-3:9
5.0 lnc-BRCA1-3:9
5.1 lnc-BRCA1-3:9
5.2 lnc-BRCA1-3:9