Transcript: lnc-BRD1-23:9

Basic information

LNCipedia transcript ID: lnc-BRD1-23:9 
LNCipedia gene ID: lnc-BRD1-23
Ensembl Gene ID: ENSG00000188511
Ensembl Transcript ID: ENST00000343999
Location (hg38): chr22:49619642-49624920
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2816 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000343999.1
Alternative gene names: ENSG00000188511.12; C22orf34


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.3096 non-coding 
CPAT coding probability 93.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD1-23:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C22orf34-3:12
4.1 lnc-C22orf34-3:12
5.0 lnc-C22orf34-3:12
5.1 lnc-BRD1-13:9
5.2 lnc-BRD1-23:9