Transcript: lnc-BRD3OS-2:2

Basic information

LNCipedia transcript ID: lnc-BRD3OS-2:2 
LNCipedia gene ID: lnc-BRD3OS-2
Ensembl Gene ID: ENSG00000235138
Ensembl Transcript ID: ENST00000412181
RefSeq ID: NR_135126
Location (hg38): chr9:134054290-134058805
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2112 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000412181.1; RP11-374P20.4-001; OTTHUMT00000054938.1; NONHSAT135372; NR_135126.1
Alternative gene names: ENSG00000235138.1; RP11-374P20.4; OTTHUMG00000020881.1; AL445931.1; LOC100130548


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6704 non-coding 
CPAT coding probability 57.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD3OS-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR5-1:1
4.0 lnc-WDR5-1:1
4.1 lnc-WDR5-1:1
5.0 lnc-WDR5-1:1
5.1 lnc-SURF2-14:2
5.2 lnc-BRD3OS-2:2