Transcript: lnc-BRD7-3:1

Basic information

LNCipedia transcript ID: lnc-BRD7-3:1 
LNCipedia gene ID: lnc-BRD7-3
Ensembl Gene ID: ENSG00000260381
Ensembl Transcript ID: ENST00000566770
Location (hg38): chr16:50100339-50121943
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 666 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566770.1; RP11-429P3.5-001; OTTHUMT00000423146.1; NONHSAT142399
Alternative gene names: ENSG00000260381.2; RP11-429P3.5; OTTHUMG00000173451.1; AC007610.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.5783 non-coding 
CPAT coding probability 10.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD7-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRD7-3:1
4.0 lnc-BRD7-3:1
4.1 lnc-BRD7-3:1
5.0 lnc-BRD7-3:1
5.1 lnc-CFAP20-141:1
5.2 lnc-BRD7-3:1