Transcript: lnc-BRF1-4:2

Basic information

LNCipedia transcript ID: lnc-BRF1-4:2 
LNCipedia gene ID: lnc-BRF1-4
Location (hg38): chr14:105601657-105602945
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000479229; ENST00000479229.1; RP11-731F5.1-002; OTTHUMT00000380287.1; NONHSAT040385
Alternative gene names: ENSG00000254140; RP11-731F5.1; ENSG00000254140.1; OTTHUMG00000164789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF1-4:2 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-3:2
3.1 lnc-AL901608.1-3:2
4.0 lnc-AL901608.1-3:2
4.1 lnc-AL901608.1-3:2
5.0 lnc-AL901608.1-3:2
5.1 lnc-AKT1-28:2
5.2 lnc-BRF1-4:2