Transcript: lnc-BRF2-21:1

Basic information

LNCipedia transcript ID: lnc-BRF2-21:1 
LNCipedia gene ID: lnc-BRF2-21
Ensembl Gene ID: ENSG00000253524
Ensembl Transcript ID: ENST00000518181
Location (hg38): chr8:36004316-36095046
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518181; ENST00000518181.1; RP11-89M20.2-001; OTTHUMT00000376649.1; NONHSAT126008
Alternative gene names: ENSG00000253524; RP11-89M20.2; ENSG00000253524.1; OTTHUMG00000163987.1; AC124290.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.0355 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF2-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-419C23.1.1-2:1
3.1 lnc-RP11-419C23.1.1-4:1
4.0 lnc-RP11-419C23.1.1-4:1
4.1 lnc-RP11-419C23.1.1-4:1
5.0 lnc-RP11-419C23.1.1-4:1
5.1 lnc-C8orf86-63:1
5.2 lnc-BRF2-21:1