Transcript: lnc-BRF2-9:9

Basic information

LNCipedia transcript ID: lnc-BRF2-9:9 
LNCipedia gene ID: lnc-BRF2-9
Ensembl Gene ID: ENSG00000253123
Ensembl Transcript ID: ENST00000624599
Location (hg38): chr8:37326575-37330837
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3692 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523946; ENST00000523946.1; RP11-527N22.1-001; OTTHUMT00000376672.1; NONHSAT126029; ENST00000624599.1
Alternative gene names: ENSG00000253123; RP11-527N22.1; ENSG00000253123.1; OTTHUMG00000163995.1; ENSG00000253123.3; AC091182.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.3285 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF2-9:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-150O12.1.1-2:3
3.1 lnc-RP11-150O12.1.1-1:3
4.0 lnc-RP11-150O12.1.1-2:3
4.1 lnc-RP11-150O12.1.1-2:3
5.0 lnc-RP11-150O12.1.1-2:3
5.1 lnc-C8orf86-49:9
5.2 lnc-BRF2-9:9