Transcript: lnc-BRINP3-1:1

Basic information

LNCipedia transcript ID: lnc-BRINP3-1:1 
LNCipedia gene ID: lnc-BRINP3-1
Ensembl Gene ID: ENSG00000238270
Ensembl Transcript ID: ENST00000450681
Location (hg38): chr1:189868001-189868528
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000703; ENST00000450681; ENST00000450681.1; RP11-445J9.1-001; OTTHUMT00000086268.1; NONHSAT008488
Alternative gene names: XLOC_001130; linc-PTGS2-4; ENSG00000238270; RP11-445J9.1; ENSG00000238270.1; OTTHUMG00000035527.1; AL591504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.3548 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRINP3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM5C-1:1
3.1 lnc-FAM5C-1:1
4.0 lnc-FAM5C-1:1
4.1 lnc-FAM5C-1:1
5.0 lnc-FAM5C-1:1
5.1 lnc-MYOG-122:1
5.2 lnc-BRINP3-1:1