Transcript: lnc-BTBD1-1:9

Basic information

LNCipedia transcript ID: lnc-BTBD1-1:9 
LNCipedia gene ID: lnc-BTBD1-1
Ensembl Gene ID: ENSG00000260579
Ensembl Transcript ID: ENST00000565513
Location (hg38): chr15:83113617-83114566
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 396 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565513.1; RP11-382A20.2-001; OTTHUMT00000419784.1; NONHSAT047894
Alternative gene names: ENSG00000260579.1; RP11-382A20.2; OTTHUMG00000172667.1; AC024270.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.614 non-coding 
CPAT coding probability 7.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTBD1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-382A20.3.1-1:1
4.0 lnc-RP11-382A20.3.1-1:1
4.1 lnc-RP11-382A20.3.1-1:1
5.0 lnc-RP11-382A20.3.1-1:1
5.1 lnc-BTBD1-1:7
5.2 lnc-BTBD1-1:9