Transcript: lnc-BTBD10-4:1

Basic information

LNCipedia transcript ID: lnc-BTBD10-4:1 
LNCipedia gene ID: lnc-BTBD10-4
Ensembl Gene ID: ENSG00000203258
Ensembl Transcript ID: ENST00000454086
Location (hg38): chr11:12921186-12922925
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454086.2; RP11-47J17.2-001; OTTHUMT00000386996.1
Alternative gene names: ENSG00000203258.3; RP11-47J17.2; OTTHUMG00000165903.1; AC013549.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.654 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTBD10-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BTBD10-4:1
4.0 lnc-BTBD10-4:1
4.1 lnc-BTBD10-4:1
5.0 lnc-BTBD10-4:1
5.1 lnc-COPB1-19:1
5.2 lnc-BTBD10-4:1