Transcript: lnc-BTBD17-3:2

Basic information

LNCipedia transcript ID: lnc-BTBD17-3:2 
LNCipedia gene ID: lnc-BTBD17-3
Ensembl Gene ID: ENSG00000246731
Ensembl Transcript ID: ENST00000499670
RefSeq ID: NR_026914
Location (hg38): chr17:74209980-74213321
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2501 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499670; ENST00000499670.2; CTD-2514K5.2-001; OTTHUMT00000387456.1; NONHSAT055775; NR_026914.1
Alternative gene names: ENSG00000246731; CTD-2514K5.2; ENSG00000246731.2; OTTHUMG00000166017.1; MGC16275; AC100786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9331 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTBD17-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD17-1:2
3.1 lnc-BTBD17-3:2
4.0 lnc-BTBD17-3:2
4.1 lnc-BTBD17-3:2
5.0 lnc-BTBD17-3:2
5.1 lnc-GRB2-33:2
5.2 lnc-BTBD17-3:2