Transcript: lnc-BTBD17-3:3

Basic information

LNCipedia transcript ID: lnc-BTBD17-3:3 
LNCipedia gene ID: lnc-BTBD17-3
Ensembl Gene ID: ENSG00000246731
Ensembl Transcript ID: ENST00000531617
Location (hg38): chr17:74212674-74213308
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 536 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531617; ENST00000531617.1; CTD-2514K5.2-003; OTTHUMT00000387458.1; NONHSAT055777
Alternative gene names: ENSG00000246731; CTD-2514K5.2; ENSG00000246731.2; OTTHUMG00000166017.1; MGC16275; AC100786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.368 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTBD17-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD17-1:3
3.1 lnc-BTBD17-3:3
4.0 lnc-BTBD17-3:3
4.1 lnc-BTBD17-3:3
5.0 lnc-BTBD17-3:3
5.1 lnc-GRB2-33:4
5.2 lnc-BTBD17-3:3