Transcript: lnc-BTC-7:1

Basic information

LNCipedia transcript ID: lnc-BTC-7:1 
LNCipedia gene ID: lnc-BTC-7
Ensembl Gene ID: ENSG00000250532
Ensembl Transcript ID: ENST00000508581
Location (hg38): chr4:74418917-74440457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007778; ENST00000508581.1; RP11-727M10.1-001; OTTHUMT00000362729.1; NONHSAT096894
Alternative gene names: XLOC_003980; linc-CXCL2; ENSG00000250532.1; RP11-727M10.1; OTTHUMG00000160863.1; AC021180.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.5413 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTC-7:1 no no no no

Available literature

  1. Guo (2014), Integrated analysis of long noncoding RNAs and mRNAs reveals their potential roles in the pathogenesis of uterine leiomyomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCL2-2:1
3.1 lnc-CXCL2-2:1
4.0 lnc-CXCL2-2:1
4.1 lnc-CXCL2-2:1
5.0 lnc-CXCL2-2:1
5.1 lnc-CXCL11-26:1
5.2 lnc-BTC-7:1