Transcript: lnc-BTG3-4:1

Basic information

LNCipedia transcript ID: lnc-BTG3-4:1 
LNCipedia gene ID: lnc-BTG3-4
Location (hg38): chr21:16754519-16815688
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028872; ENST00000444868; ENST00000444868.1; AP000473.6-001; OTTHUMT00000158057.1; NONHSAT081266
Alternative gene names: XLOC_014008; linc-NRIP1-5; ENSG00000237735; AP000473.6; ENSG00000237735.1; OTTHUMG00000074394.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.7628 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTG3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTG3-4:1
3.1 lnc-BTG3-4:1
4.0 lnc-BTG3-4:1
4.1 lnc-BTG3-4:1
5.0 lnc-BTG3-4:1
5.1 lnc-N6AMT1-90:1
5.2 lnc-BTG3-4:1