Transcript: lnc-BTG4-2:1

Basic information

LNCipedia transcript ID: lnc-BTG4-2:1 
LNCipedia gene ID: lnc-BTG4-2
Ensembl Gene ID: ENSG00000255428
Ensembl Transcript ID: ENST00000528614
RefSeq ID: NR_046085
Location (hg38): chr11:111414242-111418186
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2587 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000528614; ENST00000528614.1; RP11-794P6.1-001; OTTHUMT00000391020.1; NONHSAT024107; NR_046085; NR_046085.1
Alternative gene names: ENSG00000255428; RP11-794P6.1; ENSG00000255428.1; OTTHUMG00000166660.1; AP002008.3; LOC100132078


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.9787 non-coding 
CPAT coding probability 24.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTG4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTG4-1:1
3.1 lnc-BTG4-2:1
4.0 lnc-BTG4-2:1
4.1 lnc-BTG4-2:1
5.0 lnc-BTG4-2:1
5.1 lnc-ARHGAP20-18:1
5.2 lnc-BTG4-2:1