Transcript: lnc-BUB3-4:10

Basic information

LNCipedia transcript ID: lnc-BUB3-4:10 
LNCipedia gene ID: lnc-BUB3-4
Ensembl Gene ID: ENSG00000230131
Ensembl Transcript ID: ENST00000448671
Location (hg38): chr10:123449353-123489336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017884; ENST00000448671; ENST00000448671.1; RP11-282I1.1-002; OTTHUMT00000050848.1; NONHSAT016773
Alternative gene names: XLOC_008652; linc-GPR26-3; ENSG00000230131; RP11-282I1.1; ENSG00000230131.1; OTTHUMG00000019202.1; ENSG00000230131.5; AL160290.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.3849 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BUB3-4:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR26-3:6
3.1 lnc-GPR26-4:6
4.0 lnc-GPR26-4:6
4.1 lnc-BUB3-4:10
5.0 lnc-BUB3-4:10
5.1 lnc-EDRF1-33:10
5.2 lnc-BUB3-4:10