Transcript: lnc-BUD23-1:1

Basic information

LNCipedia transcript ID: lnc-BUD23-1:1 
LNCipedia gene ID: lnc-BUD23-1
Location (hg38): chr7:73735038-73736054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000427153.1; ABHD11-AS1-001; OTTHUMT00000330453.1; NONHSAT121419
Alternative gene names: ENSG00000225969.1; ABHD11-AS1; OTTHUMG00000153263.1; LINC00035; NCRNA00035


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -362.4225 non-coding 
CPAT coding probability 7.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BUD23-1:1 no no no no

Available literature

  1. Yang (2016), Using gastric juice lncRNA-ABHD11-AS1 as a novel type of biomarker in the screening of gastric cancer., Tumour Biol.
  2. Francelle (2015), Striatal long noncoding RNA Abhd11os is neuroprotective against an N-terminal fragment of mutant huntingtin in vivo., Neurobiol. Aging
  3. Lin (2014), Increased expression of long noncoding RNA ABHD11-AS1 in gastric cancer and its clinical significance., Med. Oncol.
  4. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WBSCR22-1:1
4.0 ABHD11-AS1:1
4.1 ABHD11-AS1:1
5.0 ABHD11-AS1:1
5.1 lnc-FKBP6-20:3
5.2 lnc-BUD23-1:1