Transcript: lnc-BUD23-1:2

Basic information

LNCipedia transcript ID: lnc-BUD23-1:2 
LNCipedia gene ID: lnc-BUD23-1
RefSeq ID: NR_026690
Location (hg38): chr7:73735069-73736000
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026690; NR_026690.1
Alternative gene names: NCRNA00035; ABHD11-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -362.4225 non-coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BUD23-1:2 no no no no

Available literature

  1. Yang (2016), Using gastric juice lncRNA-ABHD11-AS1 as a novel type of biomarker in the screening of gastric cancer., Tumour Biol.
  2. Francelle (2015), Striatal long noncoding RNA Abhd11os is neuroprotective against an N-terminal fragment of mutant huntingtin in vivo., Neurobiol. Aging
  3. Lin (2014), Increased expression of long noncoding RNA ABHD11-AS1 in gastric cancer and its clinical significance., Med. Oncol.
  4. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WBSCR22-1:2
4.0 ABHD11-AS1:2
4.1 ABHD11-AS1:2
5.0 ABHD11-AS1:2
5.1 lnc-FKBP6-20:4
5.2 lnc-BUD23-1:2