Transcript: lnc-BUD23-1:3

Basic information

LNCipedia transcript ID: lnc-BUD23-1:3 
LNCipedia gene ID: lnc-BUD23-1
Location (hg38): chr7:73735083-73736054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225969.1|ENST00000427153.1
Alternative gene names: NCRNA00035


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -362.4225 non-coding 
CPAT coding probability 4.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BUD23-1:3 no no no no

Available literature

  1. Yang (2016), Using gastric juice lncRNA-ABHD11-AS1 as a novel type of biomarker in the screening of gastric cancer., Tumour Biol.
  2. Francelle (2015), Striatal long noncoding RNA Abhd11os is neuroprotective against an N-terminal fragment of mutant huntingtin in vivo., Neurobiol. Aging
  3. Lin (2014), Increased expression of long noncoding RNA ABHD11-AS1 in gastric cancer and its clinical significance., Med. Oncol.
  4. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ABHD11-AS1:5
5.0 ABHD11-AS1:5
5.1 lnc-FKBP6-20:5
5.2 lnc-BUD23-1:3