Transcript: lnc-BYSL-1:1

Basic information

LNCipedia transcript ID: lnc-BYSL-1:1 
LNCipedia gene ID: lnc-BYSL-1
Ensembl Gene ID: ENSG00000227516
Ensembl Transcript ID: ENST00000417465
Location (hg38): chr6:41868622-41869731
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417465; ENST00000417465.1; RP5-973N23.4-001; OTTHUMT00000106909.1; NONHSAT112778
Alternative gene names: ENSG00000227516; RP5-973N23.4; ENSG00000227516.1; OTTHUMG00000046310.1; AL160163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BYSL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BYSL-1:1
3.1 lnc-BYSL-1:1
4.0 lnc-BYSL-1:1
4.1 lnc-BYSL-1:1
5.0 lnc-BYSL-1:1
5.1 lnc-TREML4-13:1
5.2 lnc-BYSL-1:1