Transcript: lnc-C10orf143-46:8

Basic information

LNCipedia transcript ID: lnc-C10orf143-46:8 
LNCipedia gene ID: lnc-C10orf143-46
Location (hg38): chr10:130066374-130110817
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2843 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000456581; ENST00000456581.1; RP11-500G10.1-001; OTTHUMT00000051025.1; NONHSAT017017
Alternative gene names: ENSG00000237489; RP11-500G10.1; ENSG00000237489.2; OTTHUMG00000019268.1; LINC00959;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.901 non-coding 
CPAT coding probability 7.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C10orf143-46:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EBF3-1:1
3.1 lnc-EBF3-2:1
4.0 LINC00959:2
4.1 LINC00959:2
5.0 LINC00959:2
5.1 lnc-CALY-46:8
5.2 lnc-C10orf143-46:8