Transcript: lnc-C11orf74-4:1

Basic information

LNCipedia transcript ID: lnc-C11orf74-4:1 
HGNC Gene Symbol: lnc-C11orf74-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1493
Ensembl Gene ID: ENSG00000254562
Ensembl Transcript ID: ENST00000534756
Location (hg38): chr11:38648858-38655252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534756; ENST00000534756.1; RP11-64I17.1-002; OTTHUMT00000389881.1; NONHSAT018859
Alternative gene names: ENSG00000254562; RP11-64I17.1; ENSG00000254562.1; OTTHUMG00000166467.1; ENSG00000254562.5; LINC01493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -247.9061 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C11orf74-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf74-4:1
3.1 lnc-C11orf74-4:1
4.0 lnc-C11orf74-4:1
4.1 lnc-C11orf74-4:1
5.0 lnc-C11orf74-4:1
5.1 lnc-CAPRIN1-47:1
5.2 lnc-C11orf74-4:1