Transcript: lnc-C11orf88-3:1

Basic information

LNCipedia transcript ID: lnc-C11orf88-3:1 
LNCipedia gene ID: lnc-C11orf88-3
Location (hg38): chr11:111449868-111451311
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000531009.1; RP11-794P6.3-001; OTTHUMT00000391174.1; NONHSAT024108
Alternative gene names: ENSG00000255208.1; RP11-794P6.3; OTTHUMG00000166716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 203.013 coding 
CPAT coding probability 5.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C11orf88-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-794P6.2.1-1:1
4.0 lnc-RP11-794P6.2.1-1:1
4.1 lnc-RP11-794P6.2.1-1:1
5.0 lnc-RP11-794P6.2.1-1:1
5.1 lnc-PTS-24:1
5.2 lnc-C11orf88-3:1