Transcript: lnc-C11orf96-1:2

Basic information

LNCipedia transcript ID: lnc-C11orf96-1:2 
LNCipedia gene ID: lnc-C11orf96-1
Ensembl Gene ID: ENSG00000254409
Ensembl Transcript ID: ENST00000526408
Location (hg38): chr11:43921076-44001157
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 743 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526408.1; RP11-613D13.4-002; OTTHUMT00000390032.1; NONHSAT018971
Alternative gene names: ENSG00000254409.1; RP11-613D13.4; OTTHUMG00000166493.1; AC087521.3; ENSG00000254409.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.0865 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C11orf96-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf96-1:2
4.0 lnc-C11orf96-1:2
4.1 lnc-C11orf96-1:2
5.0 lnc-C11orf96-1:2
5.1 lnc-CAPRIN1-68:2
5.2 lnc-C11orf96-1:2