Transcript: lnc-C12orf29-1:1

Basic information

LNCipedia transcript ID: lnc-C12orf29-1:1 
LNCipedia gene ID: lnc-C12orf29-1
Ensembl Gene ID: ENSG00000257940
Ensembl Transcript ID: ENST00000548691
Location (hg38): chr12:87816486-87817831
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548691; ENST00000548691.1; RP11-248E9.6-001; OTTHUMT00000406326.1; NONHSAT029776
Alternative gene names: ENSG00000257940; RP11-248E9.6; ENSG00000257940.1; OTTHUMG00000169867.1; AC079598.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.563 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C12orf29-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C12orf29-1:1
3.1 lnc-C12orf29-1:1
4.0 lnc-C12orf29-1:1
4.1 lnc-C12orf29-1:1
5.0 lnc-C12orf29-1:1
5.1 lnc-C12orf29-1:1
5.2 lnc-C12orf29-1:1