Transcript: lnc-C12orf49-16:1

Basic information

LNCipedia transcript ID: lnc-C12orf49-16:1 
LNCipedia gene ID: lnc-C12orf49-16
Ensembl Gene ID: ENSG00000258337
Ensembl Transcript ID: ENST00000549373
Location (hg38): chr12:116174502-116181295
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 493 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549373.1; RP11-115H15.2-001; OTTHUMT00000404173.1; NONHSAT030930
Alternative gene names: ENSG00000258337.1; RP11-115H15.2; OTTHUMG00000169461.1; AC130895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.9436 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C12orf49-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf49-2:1
4.0 lnc-C12orf49-2:1
4.1 lnc-C12orf49-2:1
5.0 lnc-C12orf49-2:1
5.1 lnc-C12orf49-13:1
5.2 lnc-C12orf49-16:1