Transcript: lnc-C12orf49-9:1

Basic information

LNCipedia transcript ID: lnc-C12orf49-9:1 
LNCipedia gene ID: lnc-C12orf49-9
Location (hg38): chr12:116534173-116535330
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1094 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000502085; TCONS_00020258; NONHSAT030948
Alternative gene names: ENSG00000247019; XLOC_010211; linc-MED13L-2; AC090670.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.6971 non-coding 
CPAT coding probability 7.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C12orf49-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C12orf49-1:1
3.1 lnc-C12orf49-1:1
4.0 lnc-C12orf49-9:1
4.1 lnc-C12orf49-9:1
5.0 lnc-C12orf49-9:1
5.1 lnc-C12orf49-9:1
5.2 lnc-C12orf49-9:1