Transcript: lnc-C12orf71-1:2

Basic information

LNCipedia transcript ID: lnc-C12orf71-1:2 
LNCipedia gene ID: lnc-C12orf71-1
Ensembl Gene ID: ENSG00000256226
Ensembl Transcript ID: ENST00000540595
Location (hg38): chr12:27148283-27161266
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540595; ENST00000540595.1; RP11-582E3.2-002; OTTHUMT00000403260.1; NONHSAT027426
Alternative gene names: ENSG00000256226; RP11-582E3.2; ENSG00000256226.1; OTTHUMG00000169275.1; AC092747.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.3762 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C12orf71-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C12orf71-1:2
3.1 lnc-C12orf71-1:2
4.0 lnc-C12orf71-1:2
4.1 lnc-C12orf71-1:2
5.0 lnc-C12orf71-1:2
5.1 lnc-WBP11-100:2
5.2 lnc-C12orf71-1:2