Transcript: lnc-C16orf46-1:1

Basic information

LNCipedia transcript ID: lnc-C16orf46-1:1 
LNCipedia gene ID: lnc-C16orf46-1
Location (hg38): chr16:81053665-81087651
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 773 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000564536.1; RP11-303E16.8-001; OTTHUMT00000432149.1; NONHSAT143932
Alternative gene names: ENSG00000260643.1; RP11-303E16.8; OTTHUMG00000176470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1318 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf46-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf46-1:1
4.0 lnc-C16orf46-1:1
4.1 lnc-C16orf46-1:1
5.0 lnc-C16orf46-1:1
5.1 lnc-MAF-18:1
5.2 lnc-C16orf46-1:1