Transcript: lnc-C16orf58-2:1

Basic information

LNCipedia transcript ID: lnc-C16orf58-2:1 
LNCipedia gene ID: lnc-C16orf58-2
Ensembl Gene ID: ENSG00000261648
Ensembl Transcript ID: ENST00000566641
Location (hg38): chr16:31546698-31547237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566641.1; CTD-2014E2.2-001; OTTHUMT00000432897.1; NONHSAT141930
Alternative gene names: ENSG00000261648.1; CTD-2014E2.2; OTTHUMG00000176622.1; AC106730.2; AC106730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.6929 non-coding 
CPAT coding probability 11.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf58-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf58-2:1
4.0 lnc-C16orf58-2:1
4.1 lnc-C16orf58-2:1
5.0 lnc-C16orf58-2:1
5.1 lnc-SULT1A2-118:1
5.2 lnc-C16orf58-2:1