Transcript: lnc-C16orf72-5:1

Basic information

LNCipedia transcript ID: lnc-C16orf72-5:1 
LNCipedia gene ID: lnc-C16orf72-5
Location (hg38): chr16:9667951-9679530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 345 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024327; NONHSAT140474
Alternative gene names: XLOC_011640; linc-ATF7IP2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.3478 non-coding 
CPAT coding probability 5.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf72-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C16orf72-3:1
3.1 lnc-C16orf72-5:1
4.0 lnc-C16orf72-5:1
4.1 lnc-C16orf72-5:1
5.0 lnc-C16orf72-5:1
5.1 lnc-SMIM22-70:1
5.2 lnc-C16orf72-5:1