Transcript: lnc-C16orf78-4:2

Basic information

LNCipedia transcript ID: lnc-C16orf78-4:2 
LNCipedia gene ID: lnc-C16orf78-4
Ensembl Gene ID: ENSG00000261421
Ensembl Transcript ID: ENST00000565146
Location (hg38): chr16:49159508-49162023
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565146.1
Alternative gene names: ENSG00000261421.1; RP11-22D3.1; AC044798.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.7746 non-coding 
CPAT coding probability 7.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-22D3.1.1-4:1
4.0 lnc-RP11-22D3.1.1-4:1
4.1 lnc-RP11-22D3.1.1-4:1
5.0 lnc-RP11-22D3.1.1-4:1
5.1 lnc-ADGRG1-162:1
5.2 lnc-C16orf78-4:2