Transcript: lnc-C17orf51-5:1

Basic information

LNCipedia transcript ID: lnc-C17orf51-5:1 
LNCipedia gene ID: lnc-C17orf51-5
Ensembl Gene ID: ENSG00000243655
Ensembl Transcript ID: ENST00000483901
Location (hg38): chr17:22524563-22525330
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000483901.2; RP11-846F4.12-001; OTTHUMT00000444742.1; NONHSAT052269
Alternative gene names: ENSG00000243655.2; RP11-846F4.12; OTTHUMG00000179091.1; AC132825.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 65.0287 coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C17orf51-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf51-5:1
4.0 lnc-C17orf51-5:1
4.1 lnc-C17orf51-5:1
5.0 lnc-C17orf51-5:1
5.1 lnc-B9D1-85:1
5.2 lnc-C17orf51-5:1