Transcript: lnc-C17orf58-1:1

Basic information

LNCipedia transcript ID: lnc-C17orf58-1:1 
LNCipedia gene ID: lnc-C17orf58-1
Location (hg38): chr17:67993880-67996431
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000580729.1; RP11-855A2.5-001; OTTHUMT00000448107.1
Alternative gene names: ENSG00000266176.1; RP11-855A2.5; OTTHUMG00000179783.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.6718 non-coding 
CPAT coding probability 14.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf58-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf58-1:1
4.0 lnc-C17orf58-1:1
4.1 lnc-C17orf58-1:1
5.0 lnc-C17orf58-1:1
5.1 lnc-CYB561-92:4
5.2 lnc-C17orf58-1:1