Transcript: lnc-C17orf58-3:1

Basic information

LNCipedia transcript ID: lnc-C17orf58-3:1 
LNCipedia gene ID: lnc-C17orf58-3
Ensembl Gene ID: ENSG00000265055
Ensembl Transcript ID: ENST00000579629
Location (hg38): chr17:68096046-68101474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 650 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579629.1; AC145343.2-001; OTTHUMT00000448121.1; NONHSAT055457
Alternative gene names: ENSG00000265055.1; AC145343.2; OTTHUMG00000179786.1; AC145343.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.9563 non-coding 
CPAT coding probability 7.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf58-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf58-3:1
4.0 lnc-C17orf58-3:1
4.1 lnc-C17orf58-3:1
5.0 lnc-C17orf58-3:1
5.1 lnc-CYB561-93:4
5.2 lnc-C17orf58-3:1