Transcript: lnc-C17orf75-3:1

Basic information

LNCipedia transcript ID: lnc-C17orf75-3:1 
LNCipedia gene ID: lnc-C17orf75-3
Ensembl Gene ID: ENSG00000265222
Ensembl Transcript ID: ENST00000578408
Location (hg38): chr17:32509954-32523424
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 927 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578408.1; RP11-466A19.8-001; OTTHUMT00000447475.1
Alternative gene names: ENSG00000265222.1; RP11-466A19.8; OTTHUMG00000179638.1; AC079336.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5117 non-coding 
CPAT coding probability 31.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf75-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf75-3:1
4.0 lnc-C17orf75-3:1
4.1 lnc-C17orf75-3:1
5.0 lnc-C17orf75-3:1
5.1 lnc-SLC6A4-116:1
5.2 lnc-C17orf75-3:1