Transcript: lnc-C17orf80-3:5

Basic information

LNCipedia transcript ID: lnc-C17orf80-3:5 
LNCipedia gene ID: lnc-C17orf80-3
Location (hg38): chr17:73513685-73518770
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2276 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000583547.1; RP11-449L23.2-001; OTTHUMT00000442053.1; NONHSAT055732
Alternative gene names: ENSG00000264985.1; RP11-449L23.2; OTTHUMG00000178451.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.0364 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf80-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf80-2:1
4.0 lnc-C17orf80-2:1
4.1 lnc-C17orf80-3:5
5.0 lnc-C17orf80-3:5
5.1 lnc-TMEM94-48:4
5.2 lnc-C17orf80-3:5