Transcript: lnc-C17orf97-4:2

Basic information

LNCipedia transcript ID: lnc-C17orf97-4:2 
LNCipedia gene ID: lnc-C17orf97-4
Ensembl Gene ID: ENSG00000262920
Ensembl Transcript ID: ENST00000572998
Location (hg38): chr17:321517-322453
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 307 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572998.1; RP11-1260E13.1-002; OTTHUMT00000436817.1
Alternative gene names: ENSG00000262920.1; RP11-1260E13.1; OTTHUMG00000177416.1; ENSG00000262920.5; AC129507.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9222 non-coding 
CPAT coding probability 24.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf97-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf97-4:2
4.0 lnc-C17orf97-4:2
4.1 lnc-C17orf97-4:2
5.0 lnc-C17orf97-4:2
5.1 lnc-RPA1-63:3
5.2 lnc-C17orf97-4:2