Transcript: lnc-C19orf12-3:1

Basic information

LNCipedia transcript ID: lnc-C19orf12-3:1 
LNCipedia gene ID: lnc-C19orf12-3
Ensembl Gene ID: ENSG00000266248
Ensembl Transcript ID: ENST00000579268
Location (hg38): chr19:29489775-29526948
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 543 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579268.1; CTC-525D6.2-001; OTTHUMT00000444113.1; NONHSAT064103
Alternative gene names: ENSG00000266248.1; CTC-525D6.2; OTTHUMG00000178959.1; AC011474.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -328.8086 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C19orf12-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf12-3:1
4.0 lnc-C19orf12-3:1
4.1 lnc-C19orf12-3:1
5.0 lnc-C19orf12-3:1
5.1 lnc-SCGB2B2-114:1
5.2 lnc-C19orf12-3:1