Transcript: lnc-C19orf48-1:2

Basic information

LNCipedia transcript ID: lnc-C19orf48-1:2 
LNCipedia gene ID: lnc-C19orf48-1
Location (hg38): chr19:50776141-50786117
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 495 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000563228.1; CTD-2568A17.1-002; OTTHUMT00000432789.1; NONHSAT067356; ENST00000563228.5
Alternative gene names: ENSG00000261341.1; CTD-2568A17.1; OTTHUMG00000176604.1; ENSG00000261341.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 223.5 coding 
CPAT coding probability 6.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C19orf48-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf48-1:2
4.0 lnc-C19orf48-1:2
4.1 lnc-C19orf48-1:2
5.0 lnc-C19orf48-1:2
5.1 lnc-FAM71E1-19:4
5.2 lnc-C19orf48-1:2