Transcript: lnc-C19orf57-4:2

Basic information

LNCipedia transcript ID: lnc-C19orf57-4:2 
LNCipedia gene ID: lnc-C19orf57-4
Ensembl Gene ID: ENSG00000267633
Ensembl Transcript ID: ENST00000586297
Location (hg38): chr19:13772406-13773631
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 428 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061352; ENST00000586297.1
Alternative gene names: ENSG00000267633.1; CTB-5E10.3; AC008686.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9579 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C19orf57-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC008686.1-4:2
4.0 lnc-AC008686.1-4:2
4.1 lnc-AC008686.1-4:2
5.0 lnc-AC008686.1-4:2
5.1 lnc-PALM3-17:2
5.2 lnc-C19orf57-4:2