Transcript: lnc-C1GALT1-1:1

Basic information

LNCipedia transcript ID: lnc-C1GALT1-1:1 
LNCipedia gene ID: lnc-C1GALT1-1
Ensembl Gene ID: ENSG00000230825
Ensembl Transcript ID: ENST00000430266
Location (hg38): chr7:7255154-7277779
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012946; ENST00000430266; ENST00000430266.1; AC005532.5-001; OTTHUMT00000324359.1; NONHSAT119106
Alternative gene names: XLOC_005981; linc-MIOS; ENSG00000230825; AC005532.5; ENSG00000230825.1; OTTHUMG00000151907.1; AC005532.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0714 non-coding 
CPAT coding probability 3.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1GALT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1GALT1-1:1
3.1 lnc-C1GALT1-1:1
4.0 lnc-C1GALT1-1:1
4.1 lnc-C1GALT1-1:1
5.0 lnc-C1GALT1-1:1
5.1 lnc-SLC29A4-35:1
5.2 lnc-C1GALT1-1:1