Transcript: lnc-C1QL4-1:1

Basic information

LNCipedia transcript ID: lnc-C1QL4-1:1 
LNCipedia gene ID: lnc-C1QL4-1
Ensembl Gene ID: ENSG00000258334
Ensembl Transcript ID: ENST00000553259
RefSeq ID: NR_120449
Location (hg38): chr12:49292631-49324576
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4166 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501178; ENST00000553259.1; RP11-161H23.9-001; OTTHUMT00000405659.1; NONHSAT028099; NR_120449; NR_120449.1
Alternative gene names: ENSG00000246003; ENSG00000258334.1; RP11-161H23.9; OTTHUMG00000169733.1; AC125611.4; LOC101927267


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 556.7531 coding 
CPAT coding probability 98.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1QL4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1QL4-1:1
3.1 lnc-C1QL4-1:1
4.0 lnc-C1QL4-1:1
4.1 lnc-C1QL4-1:1
5.0 lnc-C1QL4-1:1
5.1 lnc-RACGAP1-17:1
5.2 lnc-C1QL4-1:1