Transcript: lnc-C1QTNF9B-1:2

Basic information

LNCipedia transcript ID: lnc-C1QTNF9B-1:2 
LNCipedia gene ID: lnc-C1QTNF9B-1
Location (hg38): chr13:23940969-23946224
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420143; ENST00000420143.1; ANKRD20A19P-002; OTTHUMT00000276085.1; NONHSAT032487
Alternative gene names: ENSG00000196593; RP11-45B20.4; ENSG00000196593.4; ANKRD20A19P; OTTHUMG00000016572.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.9911 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1QTNF9B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1QTNF9B-1:2
3.1 lnc-C1QTNF9B-1:2
4.0 lnc-C1QTNF9B-1:2
4.1 lnc-C1QTNF9B-1:2
5.0 lnc-C1QTNF9B-1:2
5.1 lnc-ZDHHC20-62:5
5.2 lnc-C1QTNF9B-1:2