Transcript: lnc-C1orf232-1:5

Basic information

LNCipedia transcript ID: lnc-C1orf232-1:5 
LNCipedia gene ID: lnc-C1orf232-1
Location (hg38): chr1:26170180-26171738
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 721 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000433939.1; RP11-96L14.7-004; OTTHUMT00000019847.1; NONHSAT001781
Alternative gene names: ENSG00000236782.1; RP11-96L14.7; OTTHUMG00000007539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 538.8444 coding 
CPAT coding probability 9.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1orf232-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM63-1:2
4.0 lnc-TRIM63-1:2
4.1 lnc-TRIM63-1:2
5.0 lnc-TRIM63-1:2
5.1 lnc-CRYBG2-2:5
5.2 lnc-C1orf232-1:5