Transcript: lnc-C1orf61-2:6

Basic information

LNCipedia transcript ID: lnc-C1orf61-2:6 
LNCipedia gene ID: lnc-C1orf61-2
Ensembl Gene ID: ENSG00000236947
Ensembl Transcript ID: ENST00000452465
Location (hg38): chr1:156452897-156456577
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 675 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000452465; ENST00000452465.1; RP11-98G7.1-002; OTTHUMT00000080561.1; NONHSAT006877
Alternative gene names: ENSG00000236947; RP11-98G7.1; ENSG00000236947.1; OTTHUMG00000033094.1; ENSG00000236947.5; AL139412.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.4398 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1orf61-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEF2D-2:1
3.1 lnc-MEF2D-2:1
4.0 lnc-C1orf61-2:6
4.1 lnc-C1orf61-2:6
5.0 lnc-C1orf61-2:6
5.1 lnc-PAQR6-9:7
5.2 lnc-C1orf61-2:6