Transcript: lnc-C20orf196-3:2

Basic information

LNCipedia transcript ID: lnc-C20orf196-3:2 
LNCipedia gene ID: lnc-C20orf196-3
Location (hg38): chr20:5485542-5502858
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028098; NONHSAT078356
Alternative gene names: XLOC_013448; linc-C20orf196-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6689 non-coding 
CPAT coding probability 22.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C20orf196-3:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf196-2:1
3.1 lnc-C20orf196-3:2
4.0 lnc-C20orf196-3:2
4.1 lnc-C20orf196-3:2
5.0 lnc-C20orf196-3:2
5.1 lnc-PANK2-22:3
5.2 lnc-C20orf196-3:2