Transcript: lnc-C20orf196-3:6

Basic information

LNCipedia transcript ID: lnc-C20orf196-3:6 
LNCipedia gene ID: lnc-C20orf196-3
Location (hg38): chr20:5485541-5489173
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 957 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT078355
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1531 non-coding 
CPAT coding probability 21.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C20orf196-3:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf196-3:6
4.0 lnc-C20orf196-3:6
4.1 lnc-C20orf196-3:6
5.0 lnc-C20orf196-3:6
5.1 lnc-PANK2-22:1
5.2 lnc-C20orf196-3:6