Transcript: lnc-C20orf196-3:8

Basic information

LNCipedia transcript ID: lnc-C20orf196-3:8 
LNCipedia gene ID: lnc-C20orf196-3
Ensembl Gene ID: ENSG00000266908
Ensembl Transcript ID: ENST00000587737
Location (hg38): chr20:5499116-5502881
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078418; ENST00000587737.1
Alternative gene names: ENSG00000266908.1; RP5-1022P6.7; AL109935.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6689 non-coding 
CPAT coding probability 6.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C20orf196-3:8 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf196-3:8
4.0 lnc-C20orf196-3:8
4.1 lnc-C20orf196-3:8
5.0 lnc-C20orf196-3:8
5.1 lnc-PANK2-22:8
5.2 lnc-C20orf196-3:8